If you are interested in using the Software commercially, please contact Oxford University Innovation ('OUI'), the technology transfer company of the University, to negotiate a licence. Contact details are: fsl@innovation.ox.ac.uk quoting Reference Project 9564, FSL. Before you can run the FSL virtual machine, you need to install a Virtual Machine player package. We support the use of version 12+ of VMware's free. VMware Workstation Player software. Download the software from VMware's site and install this package by following VMware's instructions (or you can look at videos on youtube if you get stuck). FSL is available precompiled for the Linux and Mac OS X operating systems. Windows is supported via a Linux Virtual Machine. The sources are also available if you want to compile it yourself. Download FSL Installation instructions. Mac OS X; Linux; Windows; You are compiling the source distribution instead of taking a binary distribution; Running. FSL Install Script. An automated installer, fslinstaller.sh is available to carry out the installation (or application of a patch). In addition it will install FSLView into /Applications, automatically configure your environment to enable you to run FSL and (on Mac OS X 10.4) will configure the Apple Terminal application to allow the launching of X11 applications from it. Software Download. If you’d like to transfer the data stored in your FreeStyle Libre reader to your computer (PC or Mac) so you can take a closer look, then you’ll need to download the FreeStyle Libre software. Just click on the link below and follow the instructions.

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NeuroDebian provides a large collection of popular neuroscience researchsoftware for the Debian operating system as well as Ubuntu and otherderivatives. Popular packages include AFNI,FSL, PyMVPA andmany others. While we do strive to maintain a high level ofquality, we make no guarantee that a given package works as expected, so usethem at your own risk. If you do encounter problems or you just like to saythanks, simply send us an email.

Learn more about NeuroDebian, the goals of this project, and help us spread the word about NeuroDebian!

brilliant! as promised, all problems are [on their way to being] solved. (well, at least in so far as neuroscience is concerned :) very cool and as pointed out, NeuroDebian lets you try out all the cool toys of neuroscience research with a very straightforward ease of use (esp. with the virtual machine). very nice..keep up the good work!

—– [2010-05-05] Source: NITRC NeuroDebian reviews

Get NeuroDebian¶

First select what kind of operating system you are using, and then choose adownload server close to you:

You can enable NeuroDebian on your system by simply copying and pasting thefollowing two commands into a terminal window. This will add the NeuroDebianrepository to your native package management system, and you will be able toinstall neuroscience software the same way as any other package.

Now you can update the package index and you are ready to install packages.Simply execute the following command in a terminal:

You are ready to go – enjoy NeuroDebian!

Note

Not every package is available for all distributions/releases. For informationabout which package version is available for which release and architecture,please have a look at the corresponding package pages.

For all non-Debian operating systems we recommend to deploy NeuroDebian as avirtual appliance (virtual machine) – this will only take a few minutes.On all modern hardware (built withinthe last 3-4 years) a virtual appliance is a convenient solution to runNeuroDebian simultaneously with the primary operating system – withoutnoticeable performance loss. To start using NeuroDebian:

1. Download this image file:

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2. Import this image into VirtualBox. If you do not have VirtualBoxinstalled yet, visit the VirtualBox download page and get an installer for yoursystem (installers for Windows, Linux, Mac and Solaris are available).
3. Finish the configuration by following the instructions on setting upthe virtual appliance. [Virtual machinesetup video tutorial]

You are ready to go – enjoy NeuroDebian!

Note

If you want a verified stable (but older) virtual appliances basedon Debian 7.8 (wheezy) release, download one of the image fileslisted below.

FTB has switched support to the Twitch app, which can be downloaded. Minecraft ftb launcher download mac launcher. Download the.exe or.app file from. Navigate to the.exe or.app file on your computer and open it. Purchase Minecraft from and create an account. Install Minecraft and launch it at least once to verify it runs successfully on your computer.Installing the launcher Twitch App LauncherThe steps above pertain to the legacy FTB launcher.

• NeuroDebian 7.8.0 image (32bit) [~652MB]
• NeuroDebian 7.8.0 image (64bit) [~650MB]

News¶

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1. Linux

   Contents

   1. Advanced usage

Debian/Ubuntu users should install FSL from the Neurodebian site - http://neuro.debian.net/pkgs/fsl-complete.html and read the setup instructions.

Quick start for Debian/Ubuntu users

As of fsl 5.0 all you need do is add '. /etc/fsl/5.0/fsl.sh' to the end of your .profile file. When you next login you should find the fsl programs are available.

FSL is available ready to run for 64bit Centos 5 and Centos 6. As distributed these Linux variants require no additional software to run. See the FAQ for help with running FSL on other Linux platforms (eg SuSE).

The fslinstaller.py script carries out the installation of FSL, configuring your environment to enable you to run FSL from your terminals.

if you use Mathworks' MATLAB it will configure your startup.m file to allow you to use the FSL MATLAB functions and on OS X platforms it will also install FSLView into /Applications.

Administrative privileges may be required

Installation into certain folders on your computer (eg the default, /usr/local) may require administrative privileges. If this is the case, the installer will attempt to gain these privileges through the use of the sudo command, which will require you to enter your password for verification. If you don't have any rights to use sudo (an administration account on OS X) then the installer will fail and will need to be run as the root user. Should you install as root see the configuring your account for FSL section for details on how to use the installer to setup your user account for FSL.

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The installer requires access to the internet to be able to download the FSL software appropriate for your platform and runs from within a terminal session, so you need to open a terminal:

• Linux (Centos)

  • The Terminal application can be found in Applications > System Tools > Terminal menu

• Mac

  • The Terminal application can be found in /Applications/Utilities

In the terminal change to the folder containing the downloaded file and run it; assuming that you wish to install into /usr/local (the default) then just press the Return key when the installer asks where to install to. For example if you downloaded to your Downloads folder:

Once the install completes Linux users should log out (System > Log out) and log back in to complete the FSL setup. If you are accessing the Linux computer via a remote SSH session then close the SSH session and re-login. Apple OS X users should open a new terminal window to begin using FSL.

Test that the environment and command line tools are set up correctly by doing the following:

• Start a new Terminal session (File > Open Terminal under Linux/Gnome, Shell > New Window on Mac OS X)

• Check that your environment is correct by typing: This should display the name of the directory that you installed FSL in.
• Check that your path is correct by typing: which should display a line like: (although the version number might be different).

In general, to run the FSL tools from the command line (within a terminal) you need to enter the program name in lower case (e.g. bet). Typing a command on its own (without any arguments or options) gives you a help message for that command.

A more complete test of the FSL installation can be run, if desired, by using the testing and evaluation suite FEEDS.

The FSL command line tools are located in $FSLDIR/bin. In general command-line programs are lower case (e.g. bet); the GUI version capitalised (e.g. Bet).

To bring up a simple GUI which is just a menu of the main individual FSL GUI tools, just type fsl. You are now ready to run FSL

System-wide configuration

The fslinstaller script is capable of configuring Centos computers such that all user accounts can automatically use FSL without having to configure their accounts themselves. You can do this using the -E option to the installer:

This will create files for BASH/sh and (t)csh users in /etc/profile.d which configure the FSL environment variables at login time.

Manual installation

If you don't want to/can't use the installer script then follow these instructions to install FSL.

1. Download the FSL install file using the installer
   • This will download the FSL software for your Linux version to the current folder and print out the expect MD5 checksum for this download.
2. Check the download
   • and compare the output to that given by the installer.
3. Unpacking

   To unpack a distribution, you need the UNIX tar utility. First cd to the directory where you want FSL installed (for example /usr/local). Then uncompress and untar the distribution - for example, if you have downloaded the Cent OS 5 64bit distribution to your home directory, type

4. Configure your shell

Installing as root user on Linux

If you need to install as the root user, you can do this using these commands (again assuming you downloaded to the your Desktop folder):

and entering the root account password. You should now configure your user account to enable FSL using the instructions in the following section.

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For more information on controlling the installer, run it with the -h option - there are options for downloading the install files without installation (for example for installing on multiple computers) and specifying the installation location.

Downloading the install file without installing the software

If you have to install FSL on many computers, or perhaps on a machine that doesn't have access to the internet then you can use the installer to download the FSL distribution for later use. To do this, run the installer with the -o option:

This will download the install package to the current folder and print the expected MD5 checksum for this file to the screen. To install this downloaded file, use the -f and -C options, eg:

replacing MD5sum with the hexadecimal number printed when you downloaded the file.

Scripting installation

If your computers have access to the internet then you can automate the installation process using the -q and -d options to prevent questions being asked and to specify the install location respectively. Where they cannot access our download site then you can download the install file as above and then use the -q, -d, -f and -C options with appropriate values to fully automate the install. For more details run the installer with the -h option.